Textural, mineralogical and mineral compositional observations in a suite of Neoproterozoic aillikite and calcite kimberlite dykes from southern West Greenland point to consistent variations in melt major element compositions amongst these silica-undersaturated magma types. The aillikites have notably higher bulk SiO2/CO2, H2O/CO2 and K2O compared to calcite kimberlite. Bulk rock arrays, together with field and petrographic observations, emphasize that flow sorting of olivine and other crystalline phases during magma emplacement is important in controlling the compositions of individual samples from these ultramafic dykes. Flow sorting together with variable overall proportions of entrained lithospheric mantle material result in scatter on element–element plots, which makes the interpretation of regional scale major and trace element geochemical datasets difficult. We argue that a significant proportion of the regional Ni–MgO variation in the ultramafic dyke suite of SW Greenland is due to variation in the proportion of an entrained refractory lithospheric mantle component. Therefore, ratios of elements to MgO can be used as proxies for melt compositions. Ratios of SiO2, TiO2, Al2O3, FeO and K2O over MgO are systematically higher, and CO2/MgO lower, in aillikites compared to calcite kimberlites. The trace element patterns of the calcite kimberlite and aillikite dykes show strong similarities in incompatible element concentrations, resulting in overlapping ratios for the highly to moderately incompatible elements. However, differences in Zr-Hf concentrations between rock types imply differences in mantle source mineralogy. Guided by our observations, we present mixing models that demonstrate that partial flux-melting of phlogopite–ilmenite metasomes within the cratonic mantle lithosphere is capable of produce the geochemical characteristics of aillikites and mela-aillikites in West Greenland. Fusion of cratonic metasomes was initiated by infiltrating asthenosphere-derived carbonatitic melts previously identified as the parental liquids to calcite kimberlite.